X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceI.java;fp=src%2Fjalview%2Fdatamodel%2FSequenceI.java;h=1615bee53d641b705f8f9a643e736681afd94303;hb=2f219368c3a4a3ff0ed6a34f84d005a3d85c9963;hp=ec76cb99abaf45a1264721752e550ffceba7f99f;hpb=8eaa775e59bf928f8899f9ada5c9811200c2853a;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index ec76cb9..1615bee 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -22,6 +22,7 @@ package jalview.datamodel;
 
 import jalview.datamodel.features.SequenceFeaturesI;
 
+import java.util.BitSet;
 import java.util.List;
 import java.util.Vector;
 
@@ -500,4 +501,11 @@ public interface SequenceI extends ASequenceI
    * @return
    */
   List<SequenceFeature> findFeatures(int fromCol, int toCol, String... types);
+  
+  /**
+   * 
+   * @return BitSet corresponding to index [0,length) where Comparison.isGap()
+   *         returns true.
+   */
+  BitSet getInsertionsAsBits();
 }