X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceI.java;h=87c964f54db8268b2e02d4834b74ddfd76e49fe9;hb=34d8b4dc08dcd27c3b5ac3bf7811f709b4db5938;hp=d1e38531ef2c02b50686cba5cfc1758d29f9ca70;hpb=688e59f05f78f52d949f29cd5adc33503d98a147;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index d1e3853..87c964f 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -17,7 +17,7 @@
  */
 package jalview.datamodel;
 
-import java.util.*;
+import java.util.Vector;
 
 /**
  * DOCUMENT ME!
@@ -348,5 +348,15 @@ public interface SequenceI
    *          null or mapping from entry's numbering to local start/end
    */
   public void transferAnnotation(SequenceI entry, Mapping mp);
+  
+  /**
+   * @param index The sequence index in the MSA 
+   */
+  public void setIndex(int index);
+  
+  /**
+   * @return The index of the sequence in the alignment
+   */
+  public int getIndex();
 
 }