X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2Fxdb%2Fembl%2FEmblEntry.java;fp=src%2Fjalview%2Fdatamodel%2Fxdb%2Fembl%2FEmblEntry.java;h=3ba36cab331c0cb123c72ade174387f27d66ca26;hb=75f46f30f01d025e5696dfeead2c19aba316a1bf;hp=06e929d5a7e3dd461653b60d5ed54c542c75fa49;hpb=d63bbc2d56c86d7dca68e76104a8682b5e38c763;p=jalview.git diff --git a/src/jalview/datamodel/xdb/embl/EmblEntry.java b/src/jalview/datamodel/xdb/embl/EmblEntry.java index 06e929d..3ba36ca 100644 --- a/src/jalview/datamodel/xdb/embl/EmblEntry.java +++ b/src/jalview/datamodel/xdb/embl/EmblEntry.java @@ -195,7 +195,6 @@ public class EmblEntry DBRefEntry retrievedref = new DBRefEntry(sourceDb, getSequenceVersion(), accession); dna.addDBRef(retrievedref); - dna.setSourceDBRef(retrievedref); // add map to indicate the sequence is a valid coordinate frame for the // dbref retrievedref.setMap(new Mapping(null, new int[] { 1, dna.getLength() }, @@ -504,7 +503,6 @@ public class EmblEntry dnaToProteinMapping.setTo(proteinSeq); dnaToProteinMapping.setMappedFromId(proteinId); proteinSeq.addDBRef(proteinDbRef); - proteinSeq.setSourceDBRef(proteinDbRef); ref.setMap(dnaToProteinMapping); } hasUniprotDbref = true; @@ -549,7 +547,6 @@ public class EmblEntry DBRefSource.EMBLCDSProduct, getSequenceVersion(), proteinId); } product.addDBRef(proteinToEmblProteinRef); - product.setSourceDBRef(proteinToEmblProteinRef); if (dnaToProteinMapping != null && dnaToProteinMapping.getTo() != null)