X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblCdna.java;h=a2ecfcdf101ab0456ff9824470f5622f0fa5cebf;hb=b4fac54ddfb91688f281a6a2ede0d8d44ec1dd13;hp=0a9742536236ea97f7c6399a00b6a0fe40b22509;hpb=cb6d2306e75ecea509fb1fde9736ff593e8e5837;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblCdna.java b/src/jalview/ext/ensembl/EnsemblCdna.java index 0a97425..a2ecfcd 100644 --- a/src/jalview/ext/ensembl/EnsemblCdna.java +++ b/src/jalview/ext/ensembl/EnsemblCdna.java @@ -45,18 +45,13 @@ public class EnsemblCdna extends EnsemblSeqProxy } /** - * Answers true unless the feature type is 'transcript' or 'exon' (or a - * sub-type in the Sequence Ontology). These features are only retrieved in - * order to identify the exon sequence loci, and are redundant information on - * the exon sequence itself. + * Answers true unless the feature type is 'transcript' (or a sub-type in the + * Sequence Ontology). */ @Override protected boolean retainFeature(SequenceFeature sf, String accessionId) { - SequenceOntology so = SequenceOntology.getInstance(); - String type = sf.getType(); - - if (isTranscript(type) || so.isA(type, SequenceOntology.EXON)) + if (isTranscript(sf.getType())) { return false; }