X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGene.java;fp=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGene.java;h=75a7154595a919bf1f7454224813c8e50a519e22;hb=3459a8a691cb22508d7067f240b7254e588e77d3;hp=ac756fc553e282f2bd262299720b5a3b145f694f;hpb=5b27f1062b2203c4c31702e205f4c78e1992063e;p=jalview.git

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index ac756fc..75a7154 100644
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -151,7 +151,7 @@ public class EnsemblGene extends EnsemblSeqProxy
       {
         continue;
       }
-      
+
       if (geneAlignment.getHeight() == 1)
       {
         // ensure id has 'correct' case for the Ensembl identifier
@@ -318,8 +318,8 @@ public class EnsemblGene extends EnsemblSeqProxy
         SequenceOntologyI.NMD_TRANSCRIPT_VARIANT,
         SequenceOntologyI.TRANSCRIPT, SequenceOntologyI.EXON,
         SequenceOntologyI.CDS };
-    List<SequenceFeature> sfs = gene.getFeatures().getFeaturesByOntology(
-            soTerms);
+    List<SequenceFeature> sfs = gene.getFeatures()
+            .getFeaturesByOntology(soTerms);
     for (SequenceFeature sf : sfs)
     {
       gene.deleteFeature(sf);
@@ -469,8 +469,9 @@ public class EnsemblGene extends EnsemblSeqProxy
       transcriptLoci.add(geneMapping.locateInTo(exon[0], exon[1]));
     }
 
-    List<int[]> transcriptRange = Arrays.asList(new int[] {
-        transcript.getStart(), transcript.getEnd() });
+    List<int[]> transcriptRange = Arrays
+            .asList(new int[]
+            { transcript.getStart(), transcript.getEnd() });
     MapList mapList = new MapList(transcriptRange, transcriptLoci, 1, 1);
 
     transcript.setGeneLoci(loci.getSpeciesId(), loci.getAssemblyId(),