X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblInfo.java;h=a32edb35a19116d27047061034ed0b9a6268da76;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=e2d2725e371c81950f1bf806288eb79083d78f66;hpb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblInfo.java b/src/jalview/ext/ensembl/EnsemblInfo.java index e2d2725..a32edb3 100644 --- a/src/jalview/ext/ensembl/EnsemblInfo.java +++ b/src/jalview/ext/ensembl/EnsemblInfo.java @@ -110,17 +110,21 @@ public class EnsemblInfo extends EnsemblRestClient /* * for convenience, pre-fill ensembl.org as the domain for "ENSEMBL" */ - divisions.put(DBRefSource.ENSEMBL.toUpperCase(Locale.ROOT), ensemblDomain); + divisions.put(DBRefSource.ENSEMBL.toUpperCase(Locale.ROOT), + ensemblDomain); try { @SuppressWarnings("unchecked") - Iterator rvals = (Iterator) getJSON(getDivisionsUrl(ensemblGenomesDomain), null, -1, MODE_ITERATOR, null); + Iterator rvals = (Iterator) getJSON( + getDivisionsUrl(ensemblGenomesDomain), null, -1, + MODE_ITERATOR, null); if (rvals == null) - return; + return; while (rvals.hasNext()) { String division = rvals.next().toString(); - divisions.put(division.toUpperCase(Locale.ROOT), ensemblGenomesDomain); + divisions.put(division.toUpperCase(Locale.ROOT), + ensemblGenomesDomain); } } catch (IOException | ParseException | NumberFormatException e) { @@ -130,15 +134,17 @@ public class EnsemblInfo extends EnsemblRestClient /** * Constructs the URL for the EnsemblGenomes /info/divisions REST service - * @param domain TODO + * + * @param domain + * TODO * * @return * @throws MalformedURLException */ URL getDivisionsUrl(String domain) throws MalformedURLException { - return new URL(domain - + "/info/divisions?content-type=application/json"); + return new URL( + domain + "/info/divisions?content-type=application/json"); } /** @@ -146,7 +152,8 @@ public class EnsemblInfo extends EnsemblRestClient * * @return */ - public Set getDivisions() { + public Set getDivisions() + { if (divisions == null) { fetchDivisions();