X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblSymbol.java;fp=src%2Fjalview%2Fext%2Fensembl%2FEnsemblSymbol.java;h=7862fce533239b75f1a894fc98867650383fd6c2;hb=3eb959d7f16b64260b8bec08d49b28ffc9670517;hp=671bfecbf3925edd28645282894791ae68289e1b;hpb=6ce6753f747f2b8872993e8355c2fa163b8c24b1;p=jalview.git

diff --git a/src/jalview/ext/ensembl/EnsemblSymbol.java b/src/jalview/ext/ensembl/EnsemblSymbol.java
index 671bfec..7862fce 100644
--- a/src/jalview/ext/ensembl/EnsemblSymbol.java
+++ b/src/jalview/ext/ensembl/EnsemblSymbol.java
@@ -42,6 +42,10 @@ import org.json.simple.parser.ParseException;
  */
 public class EnsemblSymbol extends EnsemblXref
 {
+  private static final String GENE = "gene";
+  private static final String TYPE = "type";
+  private static final String ID = "id";
+
   /**
    * Constructor given the target domain to fetch data from
    * 
@@ -73,9 +77,9 @@ public class EnsemblSymbol extends EnsemblXref
       while (rvals.hasNext())
       {
         JSONObject val = (JSONObject) rvals.next();
-        String id = val.get("id").toString();
-        String type = val.get("type").toString();
-        if (id != null && "gene".equals(type))
+        String id = val.get(ID).toString();
+        String type = val.get(TYPE).toString();
+        if (id != null && GENE.equals(type))
         {
           result = id;
           break;
@@ -105,7 +109,7 @@ public class EnsemblSymbol extends EnsemblXref
     StringBuilder sb = new StringBuilder();
     sb.append(getDomain()).append("/xrefs/symbol/")
             .append(species.toString()).append("/").append(id)
-            .append("?content-type=application/json");
+            .append(CONTENT_TYPE_JSON);
     for (String t : type)
     {
       sb.append("&object_type=").append(t);
@@ -143,13 +147,14 @@ public class EnsemblSymbol extends EnsemblXref
         {
           if (taxon.isModelOrganism())
           {
-            URL url = getUrl(query, taxon, "gene");
+            URL url = getUrl(query, taxon, GENE);
             if (url != null)
             {
               br = getHttpResponse(url, ids);
               if (br != null)
               {
                 String geneId = parseSymbolResponse(br);
+                System.out.println(url + " returned " + geneId);
                 if (geneId != null && !result.contains(geneId))
                 {
                   result.add(geneId);