X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblXref.java;h=77768a6fa94243a7b354545010333b6547370e36;hb=da31d3e5aebfcdbb1ae7084bbc75bbc3539ee2e6;hp=9634ad3254f9a74d0b37c63b266ecd0425835d1a;hpb=f23f5cefe9c66bfa8b877c707d25862cabba3ddf;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblXref.java b/src/jalview/ext/ensembl/EnsemblXref.java index 9634ad3..77768a6 100644 --- a/src/jalview/ext/ensembl/EnsemblXref.java +++ b/src/jalview/ext/ensembl/EnsemblXref.java @@ -88,18 +88,6 @@ class EnsemblXref extends EnsemblRestClient return true; } - @Override - protected String getRequestMimeType(boolean multipleIds) - { - return "application/json"; - } - - @Override - protected String getResponseMimeType() - { - return "application/json"; - } - /** * Calls the Ensembl xrefs REST endpoint and retrieves any cross-references * ("primary_id") for the given identifier (Ensembl accession id) and database @@ -113,8 +101,8 @@ class EnsemblXref extends EnsemblRestClient */ public List getCrossReferences(String identifier) { - List result = new ArrayList(); - List ids = new ArrayList(); + List result = new ArrayList<>(); + List ids = new ArrayList<>(); ids.add(identifier); BufferedReader br = null; @@ -124,10 +112,10 @@ class EnsemblXref extends EnsemblRestClient if (url != null) { br = getHttpResponse(url, ids); - } - if (br != null) - { - result = parseResponse(br); + if (br != null) + { + result = parseResponse(br); + } } } catch (IOException e) { @@ -163,7 +151,7 @@ class EnsemblXref extends EnsemblRestClient throws IOException { JSONParser jp = new JSONParser(); - List result = new ArrayList(); + List result = new ArrayList<>(); try { JSONArray responses = (JSONArray) jp.parse(br); @@ -211,7 +199,7 @@ class EnsemblXref extends EnsemblRestClient protected URL getUrl(String identifier) { String url = getDomain() + "/xrefs/id/" + identifier - + "?content-type=application/json&all_levels=1"; + + CONTENT_TYPE_JSON + "&all_levels=1"; try { return new URL(url);