X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fhtsjdk%2FVCFReader.java;fp=src%2Fjalview%2Fext%2Fhtsjdk%2FVCFReader.java;h=e91164a1d4e448de0564c0c8ae9d853387937b5d;hb=cb8e52fbbc5f725e3f7f48c672cdddb0690bd978;hp=508d60996d7c4e7c0078faf483102919304c11cf;hpb=1c721468246c2aafd86fc52d954512374f576b11;p=jalview.git

diff --git a/src/jalview/ext/htsjdk/VCFReader.java b/src/jalview/ext/htsjdk/VCFReader.java
index 508d609..e91164a 100644
--- a/src/jalview/ext/htsjdk/VCFReader.java
+++ b/src/jalview/ext/htsjdk/VCFReader.java
@@ -20,8 +20,6 @@
  */
 package jalview.ext.htsjdk;
 
-import jalview.bin.Cache;
-
 import java.io.Closeable;
 import java.io.File;
 import java.io.IOException;
@@ -30,6 +28,7 @@ import htsjdk.samtools.util.CloseableIterator;
 import htsjdk.variant.variantcontext.VariantContext;
 import htsjdk.variant.vcf.VCFFileReader;
 import htsjdk.variant.vcf.VCFHeader;
+import jalview.bin.Console;
 
 /**
  * A thin wrapper for htsjdk classes to read either plain, or compressed, or
@@ -85,7 +84,7 @@ public class VCFReader implements Closeable, Iterable<VariantContext>
     }
     else
     {
-      Cache.error("File not found: " + filePath);
+      Console.error("File not found: " + filePath);
     }
   }