X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJalviewJmolBinding.java;fp=src%2Fjalview%2Fext%2Fjmol%2FJalviewJmolBinding.java;h=eb13c3060859e84b3d6c122a6828c8018c2abdb6;hb=a5e22141bc3185284588761a69f023d527e7f18e;hp=7a8bc9c0557ebbf616955c52177cb20ed85a2f22;hpb=3207f84e04c66fc89da22ed04876e50b66e94649;p=jalview.git

diff --git a/src/jalview/ext/jmol/JalviewJmolBinding.java b/src/jalview/ext/jmol/JalviewJmolBinding.java
index 7a8bc9c..eb13c30 100644
--- a/src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/src/jalview/ext/jmol/JalviewJmolBinding.java
@@ -175,7 +175,7 @@ public abstract class JalviewJmolBinding extends AAStructureBindingModel
   @Override
   public void colourByChain()
   {
-	super.colourByChain();
+    super.colourByChain();
     // TODO: colour by chain should colour each chain distinctly across all
     // visible models
     // TODO: http://issues.jalview.org/browse/JAL-628
@@ -518,10 +518,10 @@ public abstract class JalviewJmolBinding extends AAStructureBindingModel
    */
   @Override
   protected StructureMappingcommandSet[] getColourBySequenceCommands(
-          String[] files, SequenceRendererI sr, AlignmentViewPanel viewPanel)
+          String[] files, SequenceRendererI sr, AlignmentViewPanel viewPanel, boolean showFeatures)
   {
     return JmolCommands.getColourBySequenceCommand(getSsm(), files,
-            getSequence(), sr, viewPanel);
+            getSequence(), sr, viewPanel, showFeatures);
   }
 
   /**