X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJmolCommands.java;fp=src%2Fjalview%2Fext%2Fjmol%2FJmolCommands.java;h=b2aeee4321373e4d75ad5a888e1fab40f941c524;hb=14855b5ae4adcfeaa1fa9a61fea11b20a7452260;hp=8fb0de6685e6f0078b854d2ab87604d11a42e873;hpb=48b550e4b6a14c90518c55a0e30829876193c347;p=jalview.git

diff --git a/src/jalview/ext/jmol/JmolCommands.java b/src/jalview/ext/jmol/JmolCommands.java
index 8fb0de6..b2aeee4 100644
--- a/src/jalview/ext/jmol/JmolCommands.java
+++ b/src/jalview/ext/jmol/JmolCommands.java
@@ -23,7 +23,7 @@ package jalview.ext.jmol;
 import jalview.api.AlignViewportI;
 import jalview.api.AlignmentViewPanel;
 import jalview.api.FeatureRenderer;
-import jalview.api.SequenceRenderer;
+import jalview.api.SequenceRendererI;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.SequenceI;
@@ -55,7 +55,7 @@ public class JmolCommands
    */
   public static StructureMappingcommandSet[] getColourBySequenceCommand(
           StructureSelectionManager ssm, String[] files,
-          SequenceI[][] sequence, SequenceRenderer sr,
+          SequenceI[][] sequence, SequenceRendererI sr,
           AlignmentViewPanel viewPanel)
   {
     FeatureRenderer fr = viewPanel.getFeatureRenderer();
@@ -69,8 +69,7 @@ public class JmolCommands
     {
       StructureMapping[] mapping = ssm.getMapping(files[pdbfnum]);
       StringBuffer command = new StringBuffer();
-      StructureMappingcommandSet smc;
-      ArrayList<String> str = new ArrayList<String>();
+      List<String> str = new ArrayList<>();
 
       if (mapping == null || mapping.length < 1)
       {