X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJmolCommands.java;h=106d4580ca5d3e9ad0fe7abaec9af8b05eb86bc7;hb=39c97de2f7b8ef87b42f121f37d4f158d1651fe9;hp=f9ba1e466465840d9327a6ee6f31603a7ad55527;hpb=ca160187a050f6d4e50158cd5b51f75c83a7179e;p=jalview.git

diff --git a/src/jalview/ext/jmol/JmolCommands.java b/src/jalview/ext/jmol/JmolCommands.java
index f9ba1e4..106d458 100644
--- a/src/jalview/ext/jmol/JmolCommands.java
+++ b/src/jalview/ext/jmol/JmolCommands.java
@@ -323,6 +323,31 @@ public class JmolCommands extends StructureCommandsBase
             "restore STATE \"" + Platform.escapeBackslashes(filePath) + "\"");
   }
 
+  @Override
+  public List<StructureCommandI> showHetatms(List<String> toShow)
+  {
+    // always clear the current hetero cpk display
+    
+    StringBuilder sb = new StringBuilder();
+    sb.append("select hetero; cpk off;");
+    
+    if (toShow != null && !toShow.isEmpty())
+    {
+      // select what was requested
+      sb.append("select ");
+      boolean or = false;
+      for (String k : toShow)
+      {
+        sb.append(or ? " or " : " ");
+        sb.append(k);
+        or = true;
+      }
+      // and show as
+      sb.append("; cpk;");
+    }
+    
+    return Arrays.asList(new StructureCommand(sb.toString()));
+  }
   /**
    * Obsolete method, only referenced from
    * jalview.javascript.MouseOverStructureListener