X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;fp=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;h=0cbd620bf11a251593294095090106b475ce12f7;hb=d8953149cfddc56c08aecac475e5154a49f4c2f7;hp=3280471b991da36d5b1771c7aeb76f42a077e247;hpb=639715a37f34db96f6149ef25efd395398ecfbeb;p=jalview.git

diff --git a/src/jalview/ext/jmol/JmolParser.java b/src/jalview/ext/jmol/JmolParser.java
index 3280471..0cbd620 100644
--- a/src/jalview/ext/jmol/JmolParser.java
+++ b/src/jalview/ext/jmol/JmolParser.java
@@ -277,9 +277,15 @@ public class JmolParser extends StructureFile implements JmolStatusListener
     {
       if (secstr[p] >= 'A' && secstr[p] <= 'z')
       {
+        try
+        {
         asecstr[p] = new Annotation(String.valueOf(secstr[p]), null,
                 secstrcode[p], Float.NaN);
         ssFound = true;
+        } catch (Exception e)
+        {
+          // e.printStackTrace();
+        }
       }
     }