X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;fp=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;h=31ed1b719721c00da2d79fdc36fef9ae68d37257;hb=834ebffc22ed9e72b139cadf5652d1a7006da9b3;hp=0cbd620bf11a251593294095090106b475ce12f7;hpb=f7d70c3514a06321f07f6cda8dd9d26402f7f577;p=jalview.git

diff --git a/src/jalview/ext/jmol/JmolParser.java b/src/jalview/ext/jmol/JmolParser.java
index 0cbd620..31ed1b7 100644
--- a/src/jalview/ext/jmol/JmolParser.java
+++ b/src/jalview/ext/jmol/JmolParser.java
@@ -206,6 +206,12 @@ public class JmolParser extends StructureFile implements JmolStatusListener
     List<Atom> significantAtoms = new ArrayList<Atom>();
     for (org.jmol.modelset.Atom atom : ms.at)
     {
+      System.out.println("Seq Id : " + atom.getSeqID());
+      System.out.println("To String : " + atom.toString());
+      if (atom.isHetero())
+      {
+        continue;
+      }
       if (atom.getAtomName().equalsIgnoreCase("CA")
               || atom.getAtomName().equalsIgnoreCase("P"))
       {