X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fpymol%2FPymolManager.java;fp=src%2Fjalview%2Fext%2Fpymol%2FPymolManager.java;h=db712699d24b2ae204559d85fea075f681c58eba;hb=15d1b4064456f85f3ed602440b10184057460a72;hp=6a014a56c8464a4083a0168d31e083e8dc2c25de;hpb=a2214909ebf9788ca5c6386f1f1675efe3d02b9b;p=jalview.git diff --git a/src/jalview/ext/pymol/PymolManager.java b/src/jalview/ext/pymol/PymolManager.java index 6a014a5..db71269 100644 --- a/src/jalview/ext/pymol/PymolManager.java +++ b/src/jalview/ext/pymol/PymolManager.java @@ -14,6 +14,7 @@ import java.util.ArrayList; import java.util.List; import jalview.bin.Cache; +import jalview.bin.Console; import jalview.gui.Preferences; import jalview.structure.StructureCommand; import jalview.structure.StructureCommandI; @@ -140,7 +141,7 @@ public class PymolManager int rc = conn.getResponseCode(); if (rc != HttpURLConnection.HTTP_OK) { - Cache.error( + Console.error( String.format("Error status from %s: %d", rpcUrl, rc)); return result; } @@ -158,7 +159,7 @@ public class PymolManager } catch (SocketException e) { // thrown when 'quit' command is sent to PyMol - Cache.warn(String.format("Request to %s returned %s", rpcUrl, + Console.warn(String.format("Request to %s returned %s", rpcUrl, e.toString())); } catch (Exception e) { @@ -169,12 +170,12 @@ public class PymolManager { out.close(); } - if (Cache.isTraceEnabled()) + if (Console.isTraceEnabled()) { - Cache.trace("Sent: " + command.toString()); + Console.trace("Sent: " + command.toString()); if (result != null) { - Cache.trace("Received: " + result); + Console.trace("Received: " + result); } } } @@ -251,12 +252,12 @@ public class PymolManager this.pymolXmlRpcPort = getPortNumber(); if (pymolXmlRpcPort > 0) { - Cache.info("PyMOL XMLRPC started on port " + pymolXmlRpcPort); + Console.info("PyMOL XMLRPC started on port " + pymolXmlRpcPort); } else { error += "Failed to read PyMOL XMLRPC port number"; - Cache.error(error); + Console.error(error); pymolProcess.destroy(); pymolProcess = null; } @@ -300,7 +301,7 @@ public class PymolManager } } catch (Exception e) { - Cache.error("Failed to get REST port number from " + responses + Console.error("Failed to get REST port number from " + responses + ": " + e.getMessage()); // logger.error("Failed to get REST port number from " + responses + ": " // + e.getMessage()); @@ -315,10 +316,10 @@ public class PymolManager } if (port == 0) { - Cache.error("Failed to start PyMOL with XMLRPC, response was: " + Console.error("Failed to start PyMOL with XMLRPC, response was: " + responses); } - Cache.error("PyMOL started with XMLRPC on port " + port); + Console.error("PyMOL started with XMLRPC on port " + port); return port; }