X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Frbvi%2Fchimera%2FChimeraCommands.java;fp=src%2Fjalview%2Fext%2Frbvi%2Fchimera%2FChimeraCommands.java;h=d3dd6250a3e51a7c13383c13dee4954b2d6f109e;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=6d4caa220bb32d991fc3b65da2a6a574dc046ce6;hpb=c7b2143c9cf7c5e05ad63251f7d3910751b16d20;p=jalview.git

diff --git a/src/jalview/ext/rbvi/chimera/ChimeraCommands.java b/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
index 6d4caa2..d3dd625 100644
--- a/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
+++ b/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
@@ -44,21 +44,27 @@ import jalview.util.ColorUtils;
 public class ChimeraCommands extends StructureCommandsBase
 {
   // https://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/focus.html
-  private static final StructureCommand FOCUS_VIEW = new StructureCommand("focus");
+  private static final StructureCommand FOCUS_VIEW = new StructureCommand(
+          "focus");
 
   // https://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/listen.html#listresattr
-  private static final StructureCommand LIST_RESIDUE_ATTRIBUTES = new StructureCommand("list resattr");
+  private static final StructureCommand LIST_RESIDUE_ATTRIBUTES = new StructureCommand(
+          "list resattr");
 
   // https://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/stop.html
-  private static final StructureCommand CLOSE_CHIMERA = new StructureCommand("stop really");
+  private static final StructureCommand CLOSE_CHIMERA = new StructureCommand(
+          "stop really");
 
   // https://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/listen.html
-  private static final StructureCommand STOP_NOTIFY_SELECTION = new StructureCommand("listen stop selection");
+  private static final StructureCommand STOP_NOTIFY_SELECTION = new StructureCommand(
+          "listen stop selection");
 
-  private static final StructureCommand STOP_NOTIFY_MODELS = new StructureCommand("listen stop models");
+  private static final StructureCommand STOP_NOTIFY_MODELS = new StructureCommand(
+          "listen stop models");
 
   // https://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/listen.html#listselection
-  private static final StructureCommand GET_SELECTION = new StructureCommand("list selection level residue");
+  private static final StructureCommand GET_SELECTION = new StructureCommand(
+          "list selection level residue");
 
   private static final StructureCommand SHOW_BACKBONE = new StructureCommand(
           "~display all;~ribbon;chain @CA|P");
@@ -156,8 +162,7 @@ public class ChimeraCommands extends StructureCommandsBase
    * @return
    */
   protected StructureCommandI setAttribute(String attributeName,
-          String attributeValue,
-          AtomSpecModel atomSpecModel)
+          String attributeValue, AtomSpecModel atomSpecModel)
   {
     StringBuilder sb = new StringBuilder(128);
     sb.append("setattr res ").append(attributeName).append(" '")
@@ -273,7 +278,8 @@ public class ChimeraCommands extends StructureCommandsBase
     StringBuilder cmd = new StringBuilder();
     String atomSpecAlphaOnly = getAtomSpec(spec, backbone);
     String refSpecAlphaOnly = getAtomSpec(ref, backbone);
-    cmd.append("match ").append(atomSpecAlphaOnly).append(" ").append(refSpecAlphaOnly);
+    cmd.append("match ").append(atomSpecAlphaOnly).append(" ")
+            .append(refSpecAlphaOnly);
 
     /*
      * show superposed residues as ribbon
@@ -414,7 +420,8 @@ public class ChimeraCommands extends StructureCommandsBase
     // https://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/listen.html
     List<StructureCommandI> cmds = new ArrayList<>();
     cmds.add(new StructureCommand("listen start models url " + uri));
-    cmds.add(new StructureCommand("listen start select prefix SelectionChanged url " + uri));
+    cmds.add(new StructureCommand(
+            "listen start select prefix SelectionChanged url " + uri));
     return cmds;
   }