X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;fp=src%2Fjalview%2Fgui%2FAlignFrame.java;h=68d7397ff3f820eddb448bceed4379a5f75639eb;hb=48510d15aac939c20aa9db69f9ab8e948266c1cb;hp=aa41ca9014bccc92c631c620ae90dc09c1629308;hpb=c68345ea70104804843434148dd1a8b206903409;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index aa41ca9..68d7397 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -37,6 +37,7 @@ import jalview.api.SplitContainerI;
 import jalview.api.ViewStyleI;
 import jalview.api.analysis.ScoreModelI;
 import jalview.bin.Cache;
+import jalview.bin.Jalview;
 import jalview.commands.CommandI;
 import jalview.commands.EditCommand;
 import jalview.commands.EditCommand.Action;
@@ -335,7 +336,10 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
    */
   void init()
   {
-    progressBar = new ProgressBar(this.statusPanel, this.statusBar);
+    if (!Jalview.isHeadlessMode())
+    {
+      progressBar = new ProgressBar(this.statusPanel, this.statusBar);
+    }
 
     avc = new jalview.controller.AlignViewController(this, viewport,
             alignPanel);
@@ -1135,8 +1139,10 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       {
         warningMessage("Cannot save file " + fileName + " using format "
                 + format, "Alignment output format not supported");
-        saveAs_actionPerformed(null);
-        // JBPNote need to have a raise_gui flag here
+        if (!Jalview.isHeadlessMode())
+        {
+          saveAs_actionPerformed(null);
+        }
         return false;
       }