X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;fp=src%2Fjalview%2Fgui%2FAlignFrame.java;h=8a44f2784274a8c0fd768521a3e177ec69f3b00e;hb=296593216c47a835f462d1d74a40b41e4818f737;hp=5b812c2aa54add75db8337146a9fe59bb340c3b2;hpb=b87ae5ac68939a1b964682046e8b07958fae219a;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 5b812c2..8a44f27 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5603,7 +5603,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     {
       String choice = chooser.getSelectedFile().getPath();
       Cache.setProperty("LAST_DIRECTORY", choice);
-      new VCFLoader(viewport.getAlignment()).loadVCF(choice, this);
+      SequenceI[] seqs = viewport.getAlignment().getSequencesArray();
+      new VCFLoader(choice).loadVCF(seqs, this);
     }
 
   }