X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=a49470889096237447a92dfbe732ad676246dd65;hb=63a18b71aa3ed6503b6fbb8ec3543b5d66ed3f70;hp=d475c917e4f6a13f0ac67aaca4f4e61f50f7f75f;hpb=20cbd628749ac9c90b8596c386a24c5778f42c49;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index d475c91..a494708 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5544,6 +5544,16 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       alignPanel.paintAlignment(true);
     }
   }
+  public void clearAlignmentSeqRep()
+  {
+    // TODO refactor alignmentseqrep to controller
+    if (viewport.getAlignment().hasSeqrep()) {
+      viewport.getAlignment().setSeqrep(null);
+      PaintRefresher.Refresh(this, viewport.getSequenceSetId());
+      alignPanel.updateAnnotation();
+      alignPanel.paintAlignment(true);
+    }
+  }
 
   @Override
   protected void createGroup_actionPerformed(ActionEvent e)