X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignViewport.java;h=af3ab9514691221809c58f9a5da045e66dcfac98;hb=362f2db1b01f3562784864a1d6ac5f7b9be0a18a;hp=35743ab20926e58b0a716671e76efeeb4f7356ca;hpb=57dc00f8b62b404e14bd7e689ecc510ab24aeecf;p=jalview.git

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
old mode 100755
new mode 100644
index 35743ab..af3ab95
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -40,6 +40,7 @@ import java.util.*;
 import java.awt.*;
 
 import jalview.analysis.*;
+import jalview.api.StructureSelectionManagerProvider;
 
 import jalview.bin.*;
 
@@ -54,7 +55,7 @@ import jalview.structure.VamsasSource;
  * DOCUMENT ME!
  * 
  * @author $author$
- * @version $Revision$
+ * @version $Revision: 1.141 $
  */
 public class AlignViewport implements SelectionSource, VamsasSource
 {
@@ -940,13 +941,13 @@ public class AlignViewport implements SelectionSource, VamsasSource
   {
     if (alignment != null && alignment.getCodonFrames() != null)
     {
-      StructureSelectionManager.getStructureSelectionManager()
+      StructureSelectionManager.getStructureSelectionManager(Desktop.instance)
               .removeMappings(alignment.getCodonFrames());
     }
     this.alignment = align;
     if (alignment.getCodonFrames() != null)
     {
-      StructureSelectionManager.getStructureSelectionManager().addMappings(
+      StructureSelectionManager.getStructureSelectionManager(Desktop.instance).addMappings(
               alignment.getCodonFrames());
     }
   }
@@ -2050,7 +2051,7 @@ public class AlignViewport implements SelectionSource, VamsasSource
   public void sendSelection()
   {
     jalview.structure.StructureSelectionManager
-            .getStructureSelectionManager().sendSelection(
+            .getStructureSelectionManager(Desktop.instance).sendSelection(
                     new SequenceGroup(getSelectionGroup()),
                     new ColumnSelection(getColumnSelection()), this);
   }
@@ -2242,4 +2243,9 @@ public class AlignViewport implements SelectionSource, VamsasSource
       }
     }
   }
+
+  public StructureSelectionManager getStructureSelectionManager()
+  {
+    return StructureSelectionManager.getStructureSelectionManager(Desktop.instance);
+  }
 }