X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignmentPanel.java;fp=src%2Fjalview%2Fgui%2FAlignmentPanel.java;h=c7ef3cedf42543f8d9cbed9235a6ebd7c97b18b6;hb=ed2283c5f54da377a2a2fdbdb7aec75ed7041714;hp=851c58b8ccb3e5fef4accf80290a8d50e7957ad6;hpb=86c580ce122275898f6ecb1a3d70d32fd79d5815;p=jalview.git

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 851c58b..c7ef3ce 100644
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -338,7 +338,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
     // TODO: properly locate search results in view when large numbers of hidden
     // columns exist before highlighted region
     // do we need to scroll the panel?
-    // TODO: tons of nullpointereexceptions raised here.
+    // TODO: tons of nullpointerexceptions raised here.
     if (results != null && results.getSize() > 0 && av != null
             && av.getAlignment() != null)
     {
@@ -814,7 +814,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
     }
     else
     {
-      av.scrollComplementaryAlignment(evt.getSource() == hscroll);
+      av.scrollComplementaryAlignment();
     }
   }
 
@@ -1721,11 +1721,8 @@ public class AlignmentPanel extends GAlignmentPanel implements
    *          'to'; may be modified for sequence offset by this method
    * @param seqOffset
    *          the number of visible sequences to show above the mapped region
-   * @param horizontal
-   *          if true, horizontal scrolling, else vertical
    */
-  public void scrollAsComplement(SearchResults sr, int seqOffset,
-          boolean horizontal)
+  public void scrollToCentre(SearchResults sr, int seqOffset)
   {
     /*
      * To avoid jumpy vertical scrolling (if some sequences are gapped or not
@@ -1759,10 +1756,8 @@ public class AlignmentPanel extends GAlignmentPanel implements
             .setSequence(av.getAlignment().getSequenceAt(sequenceIndex));
 
     /*
-     * Scroll to position but centring the target residue. Also set a state flag
-     * to prevent adjustmentValueChanged performing this recursively.
+     * Scroll to position but centring the target residue.
      */
-    setFollowingComplementScroll(true);
     scrollToPosition(sr, true, true);
   }