X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationColumnChooser.java;h=c0d47088910a47da4b51e924af8db98bf4603013;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=8b66b8e540f48cffad5d6a72c02e756bfb37c1c9;hpb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;p=jalview.git

diff --git a/src/jalview/gui/AnnotationColumnChooser.java b/src/jalview/gui/AnnotationColumnChooser.java
index 8b66b8e..c0d4708 100644
--- a/src/jalview/gui/AnnotationColumnChooser.java
+++ b/src/jalview/gui/AnnotationColumnChooser.java
@@ -91,6 +91,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
   private HiddenColumns oldHiddenColumns;
 
   protected static int MIN_WIDTH = (Platform.isJS() ? 370 : 420);
+
   protected static int MIN_HEIGHT = (Platform.isJS() ? 370 : 430);
 
   public AnnotationColumnChooser(AlignViewport av, final AlignmentPanel ap)
@@ -100,9 +101,8 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     frame.setContentPane(this);
     frame.setLayer(JLayeredPane.PALETTE_LAYER);
     Desktop.addInternalFrame(frame,
-            MessageManager.getString("label.select_by_annotation"), 0,
-            0);
-    // BH note: MIGLayout ignores this completely, 
+            MessageManager.getString("label.select_by_annotation"), 0, 0);
+    // BH note: MIGLayout ignores this completely,
     // possibly creating a frame smaller than specified:
     frame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT));
 
@@ -158,7 +158,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
             MessageManager.getString("label.threshold_filter")));
     thresholdPanel.setBackground(Color.white);
     thresholdPanel.setFont(JvSwingUtils.getLabelFont());
-    thresholdPanel.setLayout(new MigLayout("", "[left][right]", "[][]") );
+    thresholdPanel.setLayout(new MigLayout("", "[left][right]", "[][]"));
 
     percentThreshold.setBackground(Color.white);
     percentThreshold.setFont(JvSwingUtils.getLabelFont());
@@ -300,15 +300,14 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
       if (currentAnnotation.threshold == null)
       {
         currentAnnotation.setThreshold(new jalview.datamodel.GraphLine(
-                (currentAnnotation.graphMax
-                        - currentAnnotation.graphMin) / 2f,
+                (currentAnnotation.graphMax - currentAnnotation.graphMin)
+                        / 2f,
                 "Threshold", Color.black));
       }
 
       adjusting = true;
 
-      setSliderModel(currentAnnotation.graphMin,
-              currentAnnotation.graphMax,
+      setSliderModel(currentAnnotation.graphMin, currentAnnotation.graphMax,
               currentAnnotation.threshold.value);
 
       setThresholdValueText();
@@ -322,8 +321,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
               AnnotationFilterParameter.ThresholdType.NO_THRESHOLD);
       if (currentAnnotation.isQuantitative())
       {
-        filterParams
-                .setThresholdValue(currentAnnotation.threshold.value);
+        filterParams.setThresholdValue(currentAnnotation.threshold.value);
 
         if (selectedThresholdItem == AnnotationColourGradient.ABOVE_THRESHOLD)
         {
@@ -378,8 +376,8 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     // filterAnnotations, because showing hidden columns has the side effect of
     // adding them to the selection
     av.showAllHiddenColumns();
-    av.getColumnSelection().filterAnnotations(
-            currentAnnotation.annotations, filterParams);
+    av.getColumnSelection().filterAnnotations(currentAnnotation.annotations,
+            filterParams);
 
     boolean hideCols = getActionOption() == ACTION_OPTION_HIDE;
     if (hideCols)
@@ -495,7 +493,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
 
     CardLayout switchableViewsLayout = (CardLayout) switchableViewsPanel
             .getLayout();
-    	switchableViewsLayout.show(switchableViewsPanel, currentView);
+    switchableViewsLayout.show(switchableViewsPanel, currentView);
     updateView();
   }
 
@@ -732,17 +730,17 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
       searchBox.getComponent().setToolTipText(
               MessageManager.getString("info.enter_search_text_here"));
       searchBox.addKeyListener(new java.awt.event.KeyAdapter()
-              {
-                @Override
-                public void keyPressed(KeyEvent e)
-                {
-                  if (e.getKeyCode() == KeyEvent.VK_ENTER)
-                  {
-                    e.consume();
-                    searchStringAction();
-                  }
-                }
-              });
+      {
+        @Override
+        public void keyPressed(KeyEvent e)
+        {
+          if (e.getKeyCode() == KeyEvent.VK_ENTER)
+          {
+            e.consume();
+            searchStringAction();
+          }
+        }
+      });
       searchBox.addFocusListener(new FocusAdapter()
       {
         @Override