X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationPanel.java;fp=src%2Fjalview%2Fgui%2FAnnotationPanel.java;h=260b771adeeab0b37400587f82ea5f32a6dd0f4f;hb=948bd3bcbacc509da0cefaae3eedd97300a6ccce;hp=438e81b8b0e2ea101677afd7257c0960c661db0f;hpb=3699e0fd64de573799a6cd2fd78da5dfc670d98e;p=jalview.git

diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index 438e81b..260b771 100755
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -724,7 +724,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
     if (av.hasHiddenColumns())
     {
       column = av.getAlignment().getHiddenColumns()
-              .adjustForHiddenColumns(column);
+              .visibleToAbsoluteColumn(column);
     }
 
     AlignmentAnnotation ann = aa[row];
@@ -782,6 +782,10 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
       {
         this.setToolTipText(JvSwingUtils.wrapTooltip(true, description));
       }
+      else
+      {
+        this.setToolTipText(null); // no tooltip if null or empty description
+      }
     }
     else
     {
@@ -904,6 +908,8 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
   @Override
   public void paintComponent(Graphics g)
   {
+    super.paintComponent(g);
+
     g.setColor(Color.white);
     g.fillRect(0, 0, getWidth(), getHeight());
 
@@ -959,7 +965,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
       gg.fillRect(0, 0, imgWidth, image.getHeight());
       imageFresh = true;
     }
-
+    
     drawComponent(gg, av.getRanges().getStartRes(),
             av.getRanges().getEndRes() + 1);
     imageFresh = false;
@@ -992,10 +998,8 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
     int er = av.getRanges().getEndRes() + 1;
     int transX = 0;
 
-    long stime = System.currentTimeMillis();
     gg.copyArea(0, 0, imgWidth, getHeight(),
             -horizontal * av.getCharWidth(), 0);
-    long mtime = System.currentTimeMillis();
 
     if (horizontal > 0) // scrollbar pulled right, image to the left
     {
@@ -1012,17 +1016,13 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
     drawComponent(gg, sr, er);
 
     gg.translate(-transX, 0);
-    long dtime = System.currentTimeMillis();
+
     fastPaint = true;
-    repaint();
-    long rtime = System.currentTimeMillis();
-    if (debugRedraw)
-    {
-      System.err.println("Scroll:\t" + horizontal + "\tCopyArea:\t"
-              + (mtime - stime) + "\tDraw component:\t" + (dtime - mtime)
-              + "\tRepaint call:\t" + (rtime - dtime));
-    }
 
+    // Call repaint on alignment panel so that repaints from other alignment
+    // panel components can be aggregated. Otherwise performance of the overview
+    // window and others may be adversely affected.
+    av.getAlignPanel().repaint();
   }
 
   private volatile boolean lastImageGood = false;