X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmol.java;h=41fdb8e884067872c24156e96cbb9e27f80ca396;hb=304e64fb34b32659be1bbfd39fb4e15b2f79586e;hp=217d2b1c5f89b5b641e38e5c31120d100b1587f1;hpb=61ff8fb4efa315c35149c9d11850d99e3d00c441;p=jalview.git

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index 217d2b1..41fdb8e 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -52,7 +52,6 @@ import jalview.util.BrowserLauncher;
 import jalview.util.ImageMaker;
 import jalview.util.MessageManager;
 import jalview.util.Platform;
-
 public class AppJmol extends StructureViewerBase
 {
   // ms to wait for Jmol to load files
@@ -106,7 +105,6 @@ public class AppJmol extends StructureViewerBase
               .toArray(new SequenceI[sequencesForPdb.size()]);
       i++;
     }
-
     // TODO: check if protocol is needed to be set, and if chains are
     // autodiscovered.
     jmb = new AppJmolBinding(this, ap.getStructureSelectionManager(),
@@ -134,7 +132,6 @@ public class AppJmol extends StructureViewerBase
       seqColour.setSelected(true);
       viewerColour.setSelected(false);
     }
-
     this.setBounds(viewerModel.getX(), viewerModel.getY(),
             viewerModel.getWidth(), viewerModel.getHeight());
     setViewId(viewid);
@@ -159,6 +156,7 @@ public class AppJmol extends StructureViewerBase
   {
     super.initMenus();
 
+
     viewerColour
             .setText(MessageManager.getString("label.colour_with_jmol"));
     viewerColour.setToolTipText(MessageManager
@@ -458,6 +456,7 @@ public class AppJmol extends StructureViewerBase
   @Override
   public void showConsole(boolean showConsole)
   {
+
     if (showConsole)
     {
       if (splitPane == null)