X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmolBinding.java;h=3f8175d204631cfb5e6a3a21c5b7ce3cf858dbc3;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=34d930d73d15f74604b3978795d579b4befcdd70;hpb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;p=jalview.git diff --git a/src/jalview/gui/AppJmolBinding.java b/src/jalview/gui/AppJmolBinding.java index 34d930d..3f8175d 100644 --- a/src/jalview/gui/AppJmolBinding.java +++ b/src/jalview/gui/AppJmolBinding.java @@ -214,7 +214,7 @@ public class AppJmolBinding extends JalviewJmolBinding { // todo - record which pdbids were successfully imported. StringBuilder errormsgs = new StringBuilder(); - + List files = new ArrayList<>(); String pdbid = ""; try @@ -222,7 +222,7 @@ public class AppJmolBinding extends JalviewJmolBinding String[] filesInViewer = getStructureFiles(); // TODO: replace with reference fetching/transfer code (validate PDBentry // as a DBRef?) - + for (int pi = 0; pi < getPdbCount(); pi++) { PDBEntry strucEntry = getPdbEntry(pi); @@ -231,7 +231,8 @@ public class AppJmolBinding extends JalviewJmolBinding if (file == null) { pdbid = strucEntry.getId(); - try{ + try + { file = structureViewer.fetchPdbFile(strucEntry); } catch (OutOfMemoryError oomerror) { @@ -241,7 +242,7 @@ public class AppJmolBinding extends JalviewJmolBinding ex.printStackTrace(); errormsgs.append("'").append(pdbid).append("'"); } - if (file!=null) + if (file != null) { // success files.add(file);