X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=b492ddfb51ce34a60a066b6d9410d615ab9e246c;hb=6dd554fdbf34db6b79595d5027159d20225f4894;hp=15e681837fa1c1cb9c8dea51cc9c5adb762a7fb9;hpb=15a454d6de78056c057ab64c5932dda788da979a;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index 15e6818..b492ddf 100644
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -58,7 +58,9 @@ import javax.swing.SwingUtilities;
 public class CutAndPasteTransfer extends GCutAndPasteTransfer
 {
 
-  AlignViewport viewport;
+  AlignmentViewPanel alignpanel;
+
+  AlignViewportI viewport;
 
   FileParse source = null;
   public CutAndPasteTransfer()
@@ -76,9 +78,14 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
   /**
    * DOCUMENT ME!
    */
-  public void setForInput(AlignViewport viewport)
+  public void setForInput(AlignmentViewPanel viewpanel)
   {
-    this.viewport = viewport;
+    this.alignpanel = viewpanel;
+    if (alignpanel != null)
+    {
+
+    }
+    this.viewport = alignpanel.getAlignViewport();
     if (viewport != null)
     {
       ok.setText(MessageManager.getString("action.add"));
@@ -190,13 +197,13 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
   {
     String format = new IdentifyFile().Identify(getText(), "Paste");
     // TODO: identify feature, annotation or tree file and parse appropriately.
-    Alignment al = null;
+    AlignmentI al = null;
 
     if (FormatAdapter.isValidFormat(format))
     {
       try
       {
-        FormatAdapter fa = new FormatAdapter(viewport);
+        FormatAdapter fa = new FormatAdapter(alignpanel);
         al = fa.readFile(getText(), "Paste", format);
         source = fa.getAlignFile();
 
@@ -218,7 +225,7 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
               { format });
       if (viewport != null)
       {
-        viewport.addAlignment(al, title);
+        ((AlignViewport) viewport).addAlignment(al, title);
       }
       else
       {