X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FDesktop.java;fp=src%2Fjalview%2Fgui%2FDesktop.java;h=39aa257ff521255a30e21f81fb3c90f411524d28;hb=81dc22411a15b2afb62ef80124db37479c5e764f;hp=8e579b264ca07284c7ff2ed0bcf8d3ab00267edd;hpb=02615f4ca92570e571d166aeb8d9c0bf6531424d;p=jalview.git diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java index 8e579b2..39aa257 100644 --- a/src/jalview/gui/Desktop.java +++ b/src/jalview/gui/Desktop.java @@ -167,8 +167,6 @@ public class Desktop extends jalview.jbgui.GDesktop implements static final int yOffset = 30; - private static final int THREE = 3; - private static AlignFrame currentAlignFrame; public static jalview.ws.jws1.Discoverer discoverer; @@ -407,7 +405,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements public void run() { Cache.log.debug("Filechooser init thread started."); - JalviewFileChooser chooser = new JalviewFileChooser( + new JalviewFileChooser( jalview.bin.Cache.getProperty("LAST_DIRECTORY"), jalview.io.AppletFormatAdapter.READABLE_EXTENSIONS, jalview.io.AppletFormatAdapter.READABLE_FNAMES, @@ -471,6 +469,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements }); } + @Override protected void showNews_actionPerformed(ActionEvent e) { showNews(showNews.isSelected()); @@ -488,12 +487,11 @@ public class Desktop extends jalview.jbgui.GDesktop implements @Override public void run() { - long instance = System.currentTimeMillis(); + long now = System.currentTimeMillis(); Desktop.instance.setProgressBar( - MessageManager.getString("status.refreshing_news"), - instance); + MessageManager.getString("status.refreshing_news"), now); jvnews.refreshNews(); - Desktop.instance.setProgressBar(null, instance); + Desktop.instance.setProgressBar(null, now); jvnews.showNews(); } }).start(); @@ -885,6 +883,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements { } + @Override public void dropActionChanged(DropTargetDragEvent evt) { } @@ -988,6 +987,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * @param e * DOCUMENT ME! */ + @Override public void inputLocalFileMenuItem_actionPerformed(AlignViewport viewport) { JalviewFileChooser chooser = new JalviewFileChooser( @@ -1045,6 +1045,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * @param e * DOCUMENT ME! */ + @Override public void inputURLMenuItem_actionPerformed(AlignViewport viewport) { // This construct allows us to have a wider textfield @@ -1125,16 +1126,18 @@ public class Desktop extends jalview.jbgui.GDesktop implements } /** - * DOCUMENT ME! + * Opens the CutAndPaste window for the user to paste an alignment in to * - * @param e - * DOCUMENT ME! + * @param viewPanel + * - if not null, the pasted alignment is added to the current + * alignment; if null, to a new alignment window */ - public void inputTextboxMenuItem_actionPerformed(AlignViewport viewport) + @Override + public void inputTextboxMenuItem_actionPerformed( + AlignmentViewPanel viewPanel) { CutAndPasteTransfer cap = new CutAndPasteTransfer(); -// cap.setForInput(viewport.getAlignPanel()); - cap.setForInput(null); + cap.setForInput(viewPanel); Desktop.addInternalFrame(cap, MessageManager.getString("label.cut_paste_alignmen_file"), true, 600, 500); @@ -1143,6 +1146,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements /* * Exit the program */ + @Override public void quit() { Dimension screen = Toolkit.getDefaultToolkit().getScreenSize(); @@ -1189,6 +1193,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * @param e * DOCUMENT ME! */ + @Override public void aboutMenuItem_actionPerformed(ActionEvent e) { // StringBuffer message = getAboutMessage(false); @@ -1275,6 +1280,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * @param e * DOCUMENT ME! */ + @Override public void documentationMenuItem_actionPerformed(ActionEvent e) { try @@ -1285,6 +1291,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements } } + @Override public void closeAll_actionPerformed(ActionEvent e) { JInternalFrame[] frames = desktop.getAllFrames(); @@ -1315,11 +1322,13 @@ public class Desktop extends jalview.jbgui.GDesktop implements } } + @Override public void raiseRelated_actionPerformed(ActionEvent e) { reorderAssociatedWindows(false, false); } + @Override public void minimizeAssociated_actionPerformed(ActionEvent e) { reorderAssociatedWindows(true, false); @@ -1336,6 +1345,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * @seejalview.jbgui.GDesktop#garbageCollect_actionPerformed(java.awt.event. * ActionEvent) */ + @Override protected void garbageCollect_actionPerformed(ActionEvent e) { // We simply collect the garbage @@ -1351,6 +1361,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * jalview.jbgui.GDesktop#showMemusage_actionPerformed(java.awt.event.ActionEvent * ) */ + @Override protected void showMemusage_actionPerformed(ActionEvent e) { desktop.showMemoryUsage(showMemusage.isSelected()); @@ -1363,6 +1374,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * jalview.jbgui.GDesktop#showConsole_actionPerformed(java.awt.event.ActionEvent * ) */ + @Override protected void showConsole_actionPerformed(ActionEvent e) { showConsole(showConsole.isSelected()); @@ -1467,6 +1479,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * @param e * DOCUMENT ME! */ + @Override protected void preferences_actionPerformed(ActionEvent e) { new Preferences(); @@ -1478,6 +1491,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * @param e * DOCUMENT ME! */ + @Override public void saveState_actionPerformed(ActionEvent e) { JalviewFileChooser chooser = new JalviewFileChooser( @@ -1549,6 +1563,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements * @param e * DOCUMENT ME! */ + @Override public void loadState_actionPerformed(ActionEvent e) { JalviewFileChooser chooser = new JalviewFileChooser( @@ -1599,6 +1614,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements } } + @Override public void inputSequence_actionPerformed(ActionEvent e) { new SequenceFetcher(this); @@ -1851,6 +1867,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements jalview.gui.VamsasApplication v_client = null; + @Override public void vamsasImport_actionPerformed(ActionEvent e) { if (v_client == null) @@ -1996,6 +2013,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements return (v_client.inSession()); } + @Override public void vamsasStart_actionPerformed(ActionEvent e) { if (v_client == null) @@ -2044,6 +2062,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements .getString("label.new_vamsas_session")); } + @Override public void vamsasStop_actionPerformed(ActionEvent e) { if (v_client != null) @@ -2124,6 +2143,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements } } + @Override public void vamsasSave_actionPerformed(ActionEvent e) { if (v_client != null) @@ -2249,10 +2269,10 @@ public class Desktop extends jalview.jbgui.GDesktop implements showMemoryUsage(showMemoryUsage); } - public void showMemoryUsage(boolean showMemoryUsage) + public void showMemoryUsage(boolean showMemory) { - this.showMemoryUsage = showMemoryUsage; - if (showMemoryUsage) + this.showMemoryUsage = showMemory; + if (showMemory) { Thread worker = new Thread(this); worker.start(); @@ -2341,7 +2361,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements { public void actionPerformed(ActionEvent e) { - groovyShell_actionPerformed(e); + groovyShell_actionPerformed(); } }); toolsMenu.add(groovyShell); @@ -2428,7 +2448,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements /** * Add Groovy Support to Jalview */ - public void groovyShell_actionPerformed(ActionEvent e) + public void groovyShell_actionPerformed() { // use reflection to avoid creating compilation dependency. if (!jalview.bin.Cache.groovyJarsPresent()) @@ -2483,12 +2503,12 @@ public class Desktop extends jalview.jbgui.GDesktop implements if (progressBars.get(new Long(id)) != null) { - JPanel progressPanel = progressBars.remove(new Long(id)); + JPanel panel = progressBars.remove(new Long(id)); if (progressBarHandlers.contains(new Long(id))) { progressBarHandlers.remove(new Long(id)); } - removeProgressPanel(progressPanel); + removeProgressPanel(panel); } else {