X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FDesktop.java;fp=src%2Fjalview%2Fgui%2FDesktop.java;h=ed9ed504c9cb312e17688761266f7bcb0ceb2ffa;hb=1b378087ec2d5be9b290cd63c45bfdb9e75269fb;hp=22280ede00c83a0db953d5ae95c3e5a0e6fdc93c;hpb=d43b22658a3041c6c5c28c0db3d52c648dcf92e9;p=jalview.git

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 22280ed..ed9ed50 100644
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -1935,7 +1935,9 @@ public class Desktop extends jalview.jbgui.GDesktop
       // transfer reference for existing feature settings to new alignFrame
       if (ap == af.alignPanel)
       {
-        newaf.featureSettings = viewFeatureSettings;
+        newaf.featureSettings = (viewFeatureSettings.fr.ap == ap)
+                ? viewFeatureSettings
+                : null;
         newaf.setFeatureSettingsGeometry(fsBounds);
       }
 
@@ -1954,6 +1956,14 @@ public class Desktop extends jalview.jbgui.GDesktop
 
       addInternalFrame(newaf, af.getTitle(), AlignFrame.DEFAULT_WIDTH,
               AlignFrame.DEFAULT_HEIGHT);
+      // and materialise a new feature settings dialog instance for the new alignframe
+      // (closes the old as if 'OK' was pressed)
+      if (ap == af.alignPanel && newaf.featureSettings != null
+              && newaf.featureSettings.isOpen()
+              && af.alignPanel.getAlignViewport().isShowSequenceFeatures())
+      {
+        newaf.showFeatureSettingsUI();
+      }
     }
 
     af.alignPanels.clear();
@@ -1995,7 +2005,7 @@ public class Desktop extends jalview.jbgui.GDesktop
 
         if (gatherThis)
         {
-          if (af.featureSettings != null)
+          if (af.featureSettings != null && af.featureSettings.isOpen())
           {
             if (source.featureSettings == null)
             {
@@ -2015,6 +2025,12 @@ public class Desktop extends jalview.jbgui.GDesktop
         }
       }
     }
+    // refresh the feature setting UI for the source frame if it exists
+    if (source.featureSettings != null
+            && source.featureSettings.isOpen())
+    {
+      source.showFeatureSettingsUI();
+    }
 
   }