X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FEBIFetchPanel.java;fp=src%2Fjalview%2Fgui%2FEBIFetchPanel.java;h=0000000000000000000000000000000000000000;hb=7d76e402efd4e04e179bc9bb264551bc2d3df936;hp=7fe9f2e8057e2a5725dc1f82f0c0ad5db9a18a41;hpb=f09bee67bc24f1e401b4834f8ecb14812620568c;p=jalview.git diff --git a/src/jalview/gui/EBIFetchPanel.java b/src/jalview/gui/EBIFetchPanel.java deleted file mode 100644 index 7fe9f2e..0000000 --- a/src/jalview/gui/EBIFetchPanel.java +++ /dev/null @@ -1,121 +0,0 @@ -package jalview.gui; - -import jalview.jbgui.GEBIFetchPanel; -import jalview.ws.dbsources.PDBRestClient; -import jalview.ws.uimodel.PDBSearchOptionListModel; -import jalview.ws.uimodel.PDBSearchResultPojo; -import jalview.ws.uimodel.PDBSummaryListModel; - -import javax.swing.DefaultListModel; -import javax.swing.SwingUtilities; - -@SuppressWarnings("serial") -public class EBIFetchPanel extends GEBIFetchPanel -{ - private SequenceFetcher seqFetcher; - - public EBIFetchPanel() - { - } - - public EBIFetchPanel(SequenceFetcher seqFetcher) - { - this(); - this.seqFetcher = seqFetcher; - } - - public static void main(String[] args) - { - SwingUtilities.invokeLater(new Runnable() - { - public void run() - { - new EBIFetchPanel(); - } - }); - } - - @Override - public void searchStringAction() - { - - jListSearchResult.setModel(new DefaultListModel()); - mainFrame.setTitle("PDB Sequence Fetcher"); - if (search.getText().trim().length() > 0) - { - long startTime = System.currentTimeMillis(); - - PDBSearchResultPojo resultList = new PDBRestClient().searchResult( - ((PDBSearchOptionListModel) searchFeild.getSelectedItem()).getCode(), - search.getText()); - if (resultList.getSearchSummary() != null) - { - jListSearchResult.setModel(resultList.getSearchSummary()); - } - long endTime = System.currentTimeMillis(); - mainFrame.setTitle("PDB Sequence Fetcher - " - + resultList.getItemFound() + " results (" - + (endTime - startTime) + " milli secs)"); - } - - } - - @Override - public void okActionPerformed() - { - processPDBResponseData(); - } - - - @Override - public void backActionPerformed() - { - System.out.println("back! pressed!"); - } - - @Override - public void cancelActionPerformed() - { - mainFrame.dispose(); - } - - private void processPDBResponseData() - { - mainFrame.dispose(); - StringBuilder selectedIds = new StringBuilder(); - for (PDBSummaryListModel dataSelected : jListSearchResult - .getSelectedValuesList()) - { - selectedIds.append(";").append(dataSelected.getPdbId()); - } - String ids = selectedIds.deleteCharAt(0).toString(); - seqFetcher.textArea.setText(ids); - Thread worker = new Thread(seqFetcher); - - // Thread worker = new Thread(this); - worker.start(); - } - - // @Override - // public void run() - // { - // for (PDBSummaryListModel sum : jListSearchResult - // .getSelectedValuesList()) - // { - // System.out.println("you selected ------------> " + sum.getPdbId()); - // } - // seqFetcher.guiWindow.setProgressBar(MessageManager - // .getString("status.processing"), Thread.currentThread() - // .hashCode()); - // try - // { - // Thread.sleep(1000 * 2); - // } catch (InterruptedException e) - // { - // e.printStackTrace(); - // } - // seqFetcher.guiWindow.setProgressBar(null, Thread.currentThread() - // .hashCode()); - // } - -}