X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFeatureColourChooser.java;h=18b781d78daebbd6cb443b7b15cbf664c2e8eca5;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=8d9df0e6edffb679472bb72ef65e4d0e08773115;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git
diff --git a/src/jalview/gui/FeatureColourChooser.java b/src/jalview/gui/FeatureColourChooser.java
index 8d9df0e..18b781d 100644
--- a/src/jalview/gui/FeatureColourChooser.java
+++ b/src/jalview/gui/FeatureColourChooser.java
@@ -1,36 +1,51 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.gui;
-import java.util.*;
-
-import java.awt.*;
-import java.awt.event.*;
-import javax.swing.*;
-import javax.swing.border.LineBorder;
-import javax.swing.event.*;
-
-import jalview.datamodel.*;
-import jalview.schemes.*;
+import jalview.datamodel.GraphLine;
+import jalview.schemes.AnnotationColourGradient;
+import jalview.schemes.GraduatedColor;
import jalview.util.MessageManager;
+import java.awt.BorderLayout;
+import java.awt.Color;
import java.awt.Dimension;
+import java.awt.FlowLayout;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.util.Hashtable;
+
+import javax.swing.BorderFactory;
+import javax.swing.JCheckBox;
+import javax.swing.JColorChooser;
+import javax.swing.JComboBox;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JSlider;
+import javax.swing.JTextField;
+import javax.swing.border.LineBorder;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
public class FeatureColourChooser extends JalviewDialog
{
@@ -107,10 +122,10 @@ public class FeatureColourChooser extends JalviewDialog
}
});
- float mm[] = ((float[][]) fr.minmax.get(type))[0];
+ float mm[] = ((float[][]) fr.getMinMax().get(type))[0];
min = mm[0];
max = mm[1];
- oldcs = fr.featureColours.get(type);
+ oldcs = fr.getFeatureColours().get(type);
if (oldcs instanceof GraduatedColor)
{
if (((GraduatedColor) oldcs).isAutoScale())
@@ -225,10 +240,14 @@ public class FeatureColourChooser extends JalviewDialog
threshold_actionPerformed(e);
}
});
- threshold.setToolTipText(MessageManager.getString("label.threshold_feature_display_by_score"));
- threshold.addItem(MessageManager.getString("label.threshold_feature_no_thereshold")); // index 0
- threshold.addItem(MessageManager.getString("label.threshold_feature_above_thereshold")); // index 1
- threshold.addItem(MessageManager.getString("label.threshold_feature_below_thereshold")); // index 2
+ threshold.setToolTipText(MessageManager
+ .getString("label.threshold_feature_display_by_score"));
+ threshold.addItem(MessageManager
+ .getString("label.threshold_feature_no_thereshold")); // index 0
+ threshold.addItem(MessageManager
+ .getString("label.threshold_feature_above_thereshold")); // index 1
+ threshold.addItem(MessageManager
+ .getString("label.threshold_feature_below_thereshold")); // index 2
jPanel3.setLayout(flowLayout2);
thresholdValue.addActionListener(new ActionListener()
{
@@ -243,14 +262,16 @@ public class FeatureColourChooser extends JalviewDialog
slider.setEnabled(false);
slider.setOpaque(false);
slider.setPreferredSize(new Dimension(100, 32));
- slider.setToolTipText(MessageManager.getString("label.adjust_thereshold"));
+ slider.setToolTipText(MessageManager
+ .getString("label.adjust_thereshold"));
thresholdValue.setEnabled(false);
thresholdValue.setColumns(7);
jPanel3.setBackground(Color.white);
thresholdIsMin.setBackground(Color.white);
- thresholdIsMin.setText(MessageManager.getString("label.threshold_minmax"));
- thresholdIsMin
- .setToolTipText(MessageManager.getString("label.toggle_absolute_relative_display_threshold"));
+ thresholdIsMin.setText(MessageManager
+ .getString("label.threshold_minmax"));
+ thresholdIsMin.setToolTipText(MessageManager
+ .getString("label.toggle_absolute_relative_display_threshold"));
thresholdIsMin.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent actionEvent)
@@ -259,9 +280,11 @@ public class FeatureColourChooser extends JalviewDialog
}
});
colourByLabel.setBackground(Color.white);
- colourByLabel.setText(MessageManager.getString("label.colour_by_label"));
colourByLabel
- .setToolTipText(MessageManager.getString("label.display_features_same_type_different_label_using_different_colour"));
+ .setText(MessageManager.getString("label.colour_by_label"));
+ colourByLabel
+ .setToolTipText(MessageManager
+ .getString("label.display_features_same_type_different_label_using_different_colour"));
colourByLabel.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent actionEvent)
@@ -331,7 +354,8 @@ public class FeatureColourChooser extends JalviewDialog
public void minColour_actionPerformed()
{
Color col = JColorChooser.showDialog(this,
- MessageManager.getString("label.select_colour_minimum_value"), minColour.getBackground());
+ MessageManager.getString("label.select_colour_minimum_value"),
+ minColour.getBackground());
if (col != null)
{
minColour.setBackground(col);
@@ -344,7 +368,8 @@ public class FeatureColourChooser extends JalviewDialog
public void maxColour_actionPerformed()
{
Color col = JColorChooser.showDialog(this,
- MessageManager.getString("label.select_colour_maximum_value"), maxColour.getBackground());
+ MessageManager.getString("label.select_colour_maximum_value"),
+ maxColour.getBackground());
if (col != null)
{
maxColour.setBackground(col);
@@ -363,11 +388,11 @@ public class FeatureColourChooser extends JalviewDialog
}
int aboveThreshold = AnnotationColourGradient.NO_THRESHOLD;
- if (threshold.getSelectedIndex()==1)
+ if (threshold.getSelectedIndex() == 1)
{
aboveThreshold = AnnotationColourGradient.ABOVE_THRESHOLD;
}
- else if (threshold.getSelectedIndex()==2)
+ else if (threshold.getSelectedIndex() == 2)
{
aboveThreshold = AnnotationColourGradient.BELOW_THRESHOLD;
}
@@ -458,7 +483,7 @@ public class FeatureColourChooser extends JalviewDialog
maxColour.setForeground(oldmaxColour);
minColour.setForeground(oldminColour);
}
- fr.featureColours.put(type, acg);
+ fr.setColour(type, acg);
cs = acg;
ap.paintAlignment(false);
}
@@ -483,7 +508,7 @@ public class FeatureColourChooser extends JalviewDialog
void reset()
{
- fr.featureColours.put(type, oldcs);
+ fr.setColour(type, oldcs);
ap.paintAlignment(false);
cs = null;
}