X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFeatureSettings.java;h=63b02cb488c41bf99ca26eed7ed2d4fe527119d1;hb=890bd0eac47a4b0f55bd062a359c16a43c3780a0;hp=955684c7cd175bfe919052d3e63ea2a8f7f4e8fc;hpb=ef3acde250d7d83304fb328a428b4d834fe3ac05;p=jalview.git

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index 955684c..63b02cb 100755
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -376,7 +376,7 @@ public class FeatureSettings
         }
 
         setTableData();
-        af.alignPanel.repaint();
+        af.alignPanel.paintAlignment(true);
       }
       catch (Exception ex)
       {
@@ -456,7 +456,7 @@ public class FeatureSettings
   public void updateFeatureRenderer(Object[][] data)
   {
     fr.setFeaturePriority(data);
-    af.alignPanel.repaint();
+    af.alignPanel.paintAlignment(true);
 
     if (af.alignPanel.overviewPanel != null)
     {
@@ -539,7 +539,7 @@ public class FeatureSettings
       public void stateChanged(ChangeEvent evt)
       {
         fr.setTransparency( (float) (100 - transparency.getValue()) / 100f);
-        af.alignPanel.repaint();
+        af.alignPanel.paintAlignment(true);
       }
     });