X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FFinder.java;fp=src%2Fjalview%2Fgui%2FFinder.java;h=a4d7ad0a824713414d616d4203f9ecc726fe6f0e;hb=9b5106c49c8fa0a7269f38ad1825851eb8ba5b85;hp=dcc3518e8e71ac354e7a7d33efb43464523bd5c8;hpb=24de2d6a6f3db1b9d55f367e2bf8ba112e202a8a;p=jalview.git

diff --git a/src/jalview/gui/Finder.java b/src/jalview/gui/Finder.java
index dcc3518..a4d7ad0 100755
--- a/src/jalview/gui/Finder.java
+++ b/src/jalview/gui/Finder.java
@@ -25,7 +25,6 @@ import jalview.api.FinderI;
 import jalview.datamodel.SearchResultMatchI;
 import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.SequenceFeature;
-import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
 import jalview.jbgui.GFinder;
 import jalview.util.MessageManager;
@@ -269,22 +268,19 @@ public class Finder extends GFinder
       /*
        * first time we've searched this viewport
        */
-      finder = new jalview.analysis.Finder(av.getAlignment());
+      finder = new jalview.analysis.Finder(av);
       finders.put(av, finder);
     }
 
-    SequenceGroup selectionGroup = av.getSelectionGroup();
     boolean isCaseSensitive = caseSensitive.isSelected();
     boolean doSearchDescription = searchDescription.isSelected();
     if (doFindAll)
     {
-      finder.findAll(searchString, selectionGroup, isCaseSensitive,
-              doSearchDescription);
+      finder.findAll(searchString, isCaseSensitive, doSearchDescription);
     }
     else
     {
-      finder.findNext(searchString, selectionGroup, isCaseSensitive,
-              doSearchDescription);
+      finder.findNext(searchString, isCaseSensitive, doSearchDescription);
     }
 
     searchResults = finder.getSearchResults();