X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPairwiseAlignPanel.java;fp=src%2Fjalview%2Fgui%2FPairwiseAlignPanel.java;h=f33b2d64f6b0c27d44a22b34e0ce187cee67ae7f;hb=c0501eaa85c0594f9275766f64de8ea44a59c368;hp=e736a1103ecacb117c0c1814fd70f5b1f4a28547;hpb=304e64fb34b32659be1bbfd39fb4e15b2f79586e;p=jalview.git

diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java
index e736a11..f33b2d6 100755
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -64,14 +64,14 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
             && selectionGroup.getSize() > 0;
     AlignmentView view = viewport.getAlignmentView(isSelection);
     // String[] seqStrings = viewport.getViewAsString(true);
-    String[] seqStrings = view.getSequenceStrings(viewport
-            .getGapCharacter());
+    String[] seqStrings = view
+            .getSequenceStrings(viewport.getGapCharacter());
 
     SequenceI[] seqs;
     if (isSelection)
     {
-      seqs = (SequenceI[]) view.getAlignmentAndHiddenColumns(viewport
-              .getGapCharacter())[0];
+      seqs = (SequenceI[]) view
+              .getAlignmentAndHiddenColumns(viewport.getGapCharacter())[0];
     }
     else
     {
@@ -108,8 +108,7 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
         }
         first = false;
         as.printAlignment(System.out);
-        scores[i][j] = as.getMaxScore()
-                / as.getASeq1().length;
+        scores[i][j] = as.getMaxScore() / as.getASeq1().length;
         totscore = totscore + scores[i][j];
 
         textarea.append(as.getOutput());
@@ -139,8 +138,8 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
 
     for (int i = 0; i < seqs.length; i++)
     {
-      System.out.println(String.format("%3d %s", i + 1,
-              seqs[i].getDisplayId(true)));
+      System.out.println(
+              String.format("%3d %s", i + 1, seqs[i].getDisplayId(true)));
     }
 
     /*