X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPromptUserConfig.java;h=f05459b0860cf65c1e2a02a9befdb3eb0e2fcb06;hb=cb03edaa1450e5716bd37ca5cc430a46c245e9db;hp=ac15f2b0f248edebd970816b3bc0bf1cd59f6db0;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/gui/PromptUserConfig.java b/src/jalview/gui/PromptUserConfig.java
index ac15f2b..f05459b 100644
--- a/src/jalview/gui/PromptUserConfig.java
+++ b/src/jalview/gui/PromptUserConfig.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -200,12 +200,18 @@ public class PromptUserConfig implements Runnable
     }
     try
     {
-      int reply = JOptionPane.showInternalConfirmDialog(
-              Desktop.desktop, // component,
+      int reply = JOptionPane.showConfirmDialog(
+              null, // component,
               dialogText, dialogTitle,
               (allowCancel) ? JOptionPane.YES_NO_CANCEL_OPTION
                       : JOptionPane.YES_NO_OPTION,
               JOptionPane.QUESTION_MESSAGE);
+      // now, ask the desktop to relayer any external windows that might have been obsured
+      if (Desktop.instance!=null)
+      {
+        Desktop.instance.relayerWindows();
+      }
+      // and finish parsing the result
       jalview.bin.Cache.log.debug("Got response : " + reply);
       if (reply == JOptionPane.YES_OPTION)
       {