X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSequenceRenderer.java;fp=src%2Fjalview%2Fgui%2FSequenceRenderer.java;h=9c25e0d5e4e23ad802d95bad6ccaec82d3961c41;hb=6a3f4318037072a77588afb951a5a53835d5da99;hp=15f19284c281d33cb7652973c69fa1e0455e1699;hpb=1379350f04bc63ca05bd428afb86717c4764755d;p=jalview.git

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index 15f1928..9c25e0d 100755
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -115,7 +115,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
   {
     if (cs != null)
     {
-      resBoxColour = cs.findColour(seq.getCharAt(i), i, seq.getIndex());
+      resBoxColour = cs.findColour(seq.getCharAt(i), i, seq);
     }
     else if (forOverview
             && !jalview.util.Comparison.isGap(seq.getCharAt(i)))