X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FUserDefinedColours.java;fp=src%2Fjalview%2Fgui%2FUserDefinedColours.java;h=369dde67928ad52d6563b89d71672f4a4cf8a6b5;hb=8e9cee1be3194bacb353d94a2166fff1afe8029b;hp=5ec95ede83c5edbfdf1d5a6032455ced0c6e34e9;hpb=1ddaca03529cd2b02502a1dae10c18582164972d;p=jalview.git

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index 5ec95ed..369dde6 100755
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -21,7 +21,6 @@
 package jalview.gui;
 
 import jalview.bin.Cache;
-import jalview.datamodel.SequenceGroup;
 import jalview.io.JalviewFileChooser;
 import jalview.io.JalviewFileView;
 import jalview.jbgui.GUserDefinedColours;
@@ -78,8 +77,6 @@ public class UserDefinedColours extends GUserDefinedColours implements
 
   AlignmentPanel ap;
 
-  SequenceGroup seqGroup;
-
   ColourSchemeI oldColourScheme;
 
   JInternalFrame frame;
@@ -89,28 +86,19 @@ public class UserDefinedColours extends GUserDefinedColours implements
   List<JButton> lowerCaseButtons;
 
   /**
-   * Creates a new UserDefinedColours object.
+   * Creates and displays a new UserDefinedColours panel
    * 
-   * @param ap
-   * @param sg
+   * @param alignPanel
    */
-  public UserDefinedColours(AlignmentPanel ap, SequenceGroup sg)
+  public UserDefinedColours(AlignmentPanel alignPanel)
   {
     this();
 
     lcaseColour.setEnabled(false);
 
-    this.ap = ap;
-    seqGroup = sg;
+    this.ap = alignPanel;
 
-    if (seqGroup != null)
-    {
-      oldColourScheme = seqGroup.getColourScheme();
-    }
-    else
-    {
-      oldColourScheme = ap.av.getGlobalColourScheme();
-    }
+    oldColourScheme = alignPanel.av.getGlobalColourScheme();
 
     if (oldColourScheme instanceof UserColourScheme)
     {
@@ -148,11 +136,6 @@ public class UserDefinedColours extends GUserDefinedColours implements
     Desktop.addInternalFrame(frame,
             MessageManager.getString("label.user_defined_colours"),
             MY_FRAME_WIDTH, MY_FRAME_HEIGHT, true);
-
-    if (seqGroup != null)
-    {
-      frame.setTitle(frame.getTitle() + " (" + seqGroup.getName() + ")");
-    }
   }
 
   /**
@@ -496,15 +479,7 @@ public class UserDefinedColours extends GUserDefinedColours implements
     }
     UserColourScheme ucs = getSchemeFromButtons();
 
-    if (seqGroup != null)
-    {
-      seqGroup.setColourScheme(ucs);
-      ap.paintAlignment(true);
-    }
-    else if (ap != null)
-    {
-      ap.alignFrame.changeColour(ucs);
-    }
+    ap.alignFrame.changeColour(ucs);
   }
 
   /**
@@ -695,7 +670,6 @@ public class UserDefinedColours extends GUserDefinedColours implements
       {
         return;
       }
-      ColourSchemes.getInstance().removeColourScheme(name);
     }
     JalviewFileChooser chooser = new JalviewFileChooser("jc",
             "Jalview User Colours");
@@ -809,18 +783,8 @@ public class UserDefinedColours extends GUserDefinedColours implements
   @Override
   protected void cancelButton_actionPerformed()
   {
-    if (ap != null)
-    {
-      if (seqGroup != null)
-      {
-        seqGroup.setColourScheme(oldColourScheme);
-      }
-      else
-      {
-        ap.alignFrame.changeColour(oldColourScheme);
-      }
-      ap.paintAlignment(true);
-    }
+    ap.alignFrame.changeColour(oldColourScheme);
+    ap.paintAlignment(true);
 
     try
     {