X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FUserDefinedColours.java;fp=src%2Fjalview%2Fgui%2FUserDefinedColours.java;h=9ab43278b94218c17552be163ff38bf8190c84a8;hb=c6393cfb591bf7325ad645d3d48f6fe6991c3d6d;hp=6e9a12169066690430a9bcc40b9b41adeee4a5bf;hpb=bbad0d026977fa78805e90e7c90521db9d7536c2;p=jalview.git

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index 6e9a121..9ab4327 100755
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -591,11 +591,6 @@ public class UserDefinedColours extends GUserDefinedColours implements
       ucs.setLowerCaseColours(newColours);
     }
 
-    // if (ap != null)
-    // {
-    // ucs.setThreshold(0, ap.av.isIgnoreGapsConsensus());
-    // }
-
     return ucs;
   }