X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FUserDefinedColours.java;fp=src%2Fjalview%2Fgui%2FUserDefinedColours.java;h=b1f6d1b8d194996f65d9ccf41e787546707c0362;hb=9cd96dd3e43ae32814fa8c62df274ff9224bfdbc;hp=329050090760b5518227f879f35a9fafcd2f52b7;hpb=0c805692348a8a45c279ee5f4702c7bd5a393c5e;p=jalview.git

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index 3290500..b1f6d1b 100755
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -24,8 +24,6 @@ import jalview.bin.Cache;
 import jalview.io.JalviewFileChooser;
 import jalview.io.JalviewFileView;
 import jalview.jbgui.GUserDefinedColours;
-import jalview.schemabinding.version2.Colour;
-import jalview.schemabinding.version2.JalviewUserColours;
 import jalview.schemes.ColourSchemeI;
 import jalview.schemes.ColourSchemeLoader;
 import jalview.schemes.ColourSchemes;
@@ -34,6 +32,9 @@ import jalview.schemes.UserColourScheme;
 import jalview.util.ColorUtils;
 import jalview.util.Format;
 import jalview.util.MessageManager;
+import jalview.xml.binding.jalview.JalviewUserColours;
+import jalview.xml.binding.jalview.JalviewUserColours.Colour;
+import jalview.xml.binding.jalview.ObjectFactory;
 
 import java.awt.Color;
 import java.awt.Font;
@@ -51,6 +52,8 @@ import javax.swing.JButton;
 import javax.swing.JInternalFrame;
 import javax.swing.event.ChangeEvent;
 import javax.swing.event.ChangeListener;
+import javax.xml.bind.JAXBContext;
+import javax.xml.bind.Marshaller;
 
 /**
  * This panel allows the user to assign colours to Amino Acid residue codes, and
@@ -858,9 +861,14 @@ public class UserDefinedColours extends GUserDefinedColours
         Colour col = new Colour();
         col.setName(button.getText());
         col.setRGB(Format.getHexString(button.getBackground()));
-        ucs.addColour(col);
+        ucs.getColour().add(col);
       }
-      ucs.marshal(out);
+      JAXBContext jaxbContext = JAXBContext
+              .newInstance(JalviewUserColours.class);
+      Marshaller jaxbMarshaller = jaxbContext.createMarshaller();
+      jaxbMarshaller.marshal(
+              new ObjectFactory().createJalviewUserColours(ucs), out);
+      // ucs.marshal(out);
       out.close();
     } catch (Exception ex)
     {