X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2Fstructurechooser%2FStructureChooserQuerySource.java;fp=src%2Fjalview%2Fgui%2Fstructurechooser%2FStructureChooserQuerySource.java;h=cdf0d57405ae6d90aebdb55a09a850b1ad6af35a;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=1aad2e0141c3327c3616c44be890b4b096b6e404;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git diff --git a/src/jalview/gui/structurechooser/StructureChooserQuerySource.java b/src/jalview/gui/structurechooser/StructureChooserQuerySource.java index 1aad2e0..cdf0d57 100644 --- a/src/jalview/gui/structurechooser/StructureChooserQuerySource.java +++ b/src/jalview/gui/structurechooser/StructureChooserQuerySource.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.gui.structurechooser; import java.util.Locale; @@ -237,13 +257,17 @@ public abstract class StructureChooserQuerySource if (refsAvailable > -1) { hasCanonical = true; - } else { + } + else + { protWithoutCanon++; } hasUniprot = true; - } else { + } + else + { protWithoutUni++; - + } } } @@ -251,7 +275,8 @@ public abstract class StructureChooserQuerySource // logic: all canonicals - no fetchdb // some uniprot no canonicals: defer to PDB, user can optionally fetch // - if (hasProtein && hasCanonical && !hasNA && protWithoutCanon == 0 && protWithoutUni == 0) + if (hasProtein && hasCanonical && !hasNA && protWithoutCanon == 0 + && protWithoutUni == 0) { return tdbSource;