X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fhmmer%2FHMMBuild.java;fp=src%2Fjalview%2Fhmmer%2FHMMBuild.java;h=fa9cd92b66b0ef5fc47aae240fc7efcfa580736a;hb=49db0dff1da16c3355b43a41498c1fc93ef47e91;hp=0c47c1dd8011fc05ef682d1f39fb113439eb94ac;hpb=304e64fb34b32659be1bbfd39fb4e15b2f79586e;p=jalview.git

diff --git a/src/jalview/hmmer/HMMBuild.java b/src/jalview/hmmer/HMMBuild.java
index 0c47c1d..fa9cd92 100644
--- a/src/jalview/hmmer/HMMBuild.java
+++ b/src/jalview/hmmer/HMMBuild.java
@@ -1,5 +1,6 @@
 package jalview.hmmer;
 
+import jalview.analysis.SeqsetUtils.SequenceInfo;
 import jalview.api.AlignViewportI;
 import jalview.bin.Cache;
 import jalview.datamodel.Alignment;
@@ -22,6 +23,7 @@ import java.io.IOException;
 import java.util.ArrayList;
 import java.util.Hashtable;
 import java.util.List;
+import java.util.Map;
 
 /**
  * A class that runs the hmmbuild command as a separate process.
@@ -201,7 +203,7 @@ public class HMMBuild extends HmmerCommand
       // at import level ?
 
       SequenceI[] copyArray = copy.toArray(new SequenceI[copy.size()]);
-      Hashtable sequencesHash = stashSequences(copyArray);
+      Map<String, SequenceInfo> sequencesHash = stashSequences(copyArray);
 
       exportStockholm(copyArray, alignmentFile, ac);