X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fhmmer%2FHMMSearch.java;h=6cbe0c889893313483739c25b01c03f19b1b108a;hb=1beac3545a78d4c5c3274dbb53296708d693efe0;hp=57786e592f2be26be37f21d9a051f23d7f2a6178;hpb=a82f1e47eef845557e95e61116e6b34bdd3242f3;p=jalview.git

diff --git a/src/jalview/hmmer/HMMSearch.java b/src/jalview/hmmer/HMMSearch.java
index 57786e5..6cbe0c8 100644
--- a/src/jalview/hmmer/HMMSearch.java
+++ b/src/jalview/hmmer/HMMSearch.java
@@ -34,37 +34,6 @@ public class HMMSearch extends HmmerCommand
 {
   static final String HMMSEARCH = "hmmsearch";
 
-  /*
-   * constants for i18n lookup of passed parameter names
-   */
-  static final String DATABASE_KEY = "label.database";
-
-  static final String THIS_ALIGNMENT_KEY = "label.this_alignment";
-
-  static final String USE_ACCESSIONS_KEY = "label.use_accessions";
-
-  static final String AUTO_ALIGN_SEQS_KEY = "label.auto_align_seqs";
-
-  static final String NUMBER_OF_RESULTS_KEY = "label.number_of_results";
-
-  static final String TRIM_TERMINI_KEY = "label.trim_termini";
-
-  static final String REPORTING_CUTOFF_KEY = "label.reporting_cutoff";
-
-  static final String CUTOFF_NONE = "None";
-
-  static final String CUTOFF_SCORE = "Score";
-
-  static final String CUTOFF_EVALUE = "E-Value";
-
-  static final String SEQ_EVALUE_KEY = "label.seq_evalue";
-
-  static final String DOM_EVALUE_KEY = "label.dom_evalue";
-
-  static final String SEQ_SCORE_KEY = "label.seq_score";
-
-  static final String DOM_SCORE_KEY = "label.dom_score";
-
   boolean realign = false;
 
   boolean trim = false;
@@ -104,7 +73,7 @@ public class HMMSearch extends HmmerCommand
 
     SequenceI hmmSeq = hmm.getConsensusSequence();
     long msgId = System.currentTimeMillis();
-    af.setProgressBar(MessageManager.getString("status.running_hmmsearch"),
+    af.setProgressBar(MessageManager.getString("status.running_search"),
             msgId);
 
     try