X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fhmmer%2FSearch.java;fp=src%2Fjalview%2Fhmmer%2FSearch.java;h=6c3a71d1e8dc9d18edbd7fb5bb9a6e3830f976b2;hb=49db0dff1da16c3355b43a41498c1fc93ef47e91;hp=ceb79e54275d59e2d1a6585f29e5932e8e84ad7a;hpb=304e64fb34b32659be1bbfd39fb4e15b2f79586e;p=jalview.git

diff --git a/src/jalview/hmmer/Search.java b/src/jalview/hmmer/Search.java
index ceb79e5..6c3a71d 100644
--- a/src/jalview/hmmer/Search.java
+++ b/src/jalview/hmmer/Search.java
@@ -1,5 +1,6 @@
 package jalview.hmmer;
 
+import jalview.analysis.SeqsetUtils.SequenceInfo;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
@@ -15,6 +16,7 @@ import java.io.FileReader;
 import java.io.IOException;
 import java.util.Hashtable;
 import java.util.List;
+import java.util.Map;
 import java.util.Scanner;
 
 public abstract class Search extends HmmerCommand
@@ -34,7 +36,7 @@ public abstract class Search extends HmmerCommand
 
   boolean searchAlignment = true;
 
-  Hashtable sequencesHash;
+  Map<String, SequenceInfo> sequencesHash;
 
   public Search(AlignFrame alignFrame, List<ArgumentI> args)
   {