X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fhmmer%2FSearch.java;h=ceb79e54275d59e2d1a6585f29e5932e8e84ad7a;hb=5cb4c1540eaca054c26ff42a8319f0dbffb1f8e6;hp=5c7da7ce1a07c901cc57e5161c47ba23b1899152;hpb=64f76d501cbe83740306e3aeacda7e7b2affeb6d;p=jalview.git

diff --git a/src/jalview/hmmer/Search.java b/src/jalview/hmmer/Search.java
index 5c7da7c..ceb79e5 100644
--- a/src/jalview/hmmer/Search.java
+++ b/src/jalview/hmmer/Search.java
@@ -329,6 +329,15 @@ public abstract class Search extends HmmerCommand
             searchAlignment = false;
           }
         }
+        else if (MessageManager.getString(NUMBER_OF_ITERATIONS)
+                .equals(name))
+        {
+          if (!arg.getValue().isEmpty())
+          {
+            args.add("-N");
+            args.add(arg.getValue());
+          }
+        }
       }
     }