X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAMSAFile.java;h=798249f8e1599663969032b6aac40d0db7e0cad0;hb=4a5137b64f7ec23db2a09290bfcd392984a52150;hp=f82407e2af0893280839193e524b29747d3628d1;hpb=8dd4255a671e95df3fc6d6bc4d5d6b172f682c5d;p=jalview.git

diff --git a/src/jalview/io/AMSAFile.java b/src/jalview/io/AMSAFile.java
index f82407e..798249f 100644
--- a/src/jalview/io/AMSAFile.java
+++ b/src/jalview/io/AMSAFile.java
@@ -22,6 +22,7 @@ package jalview.io;
 
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
 
 public class AMSAFile extends jalview.io.FastaFile
 {
@@ -41,9 +42,9 @@ public class AMSAFile extends jalview.io.FastaFile
    * 
    * @return DOCUMENT ME!
    */
-  public String print()
+  public String print(SequenceI[] sqs, boolean jvsuffix)
   {
-    super.print(getSeqsAsArray());
+    super.print(sqs, jvsuffix);
 
     AlignmentAnnotation aa;
     if (al.getAlignmentAnnotation() != null)