X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAlignFile.java;fp=src%2Fjalview%2Fio%2FAlignFile.java;h=e4891f08281178db8b9a1c5536cb3099c8d07626;hb=ebe0c31476d408f10e968bed024e898c02c7204e;hp=b66fb111c19b19e079039a6ecb2ea7b4c056bca1;hpb=9282440c3bafe52674446b861a6b43d9bcfa3664;p=jalview.git

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index b66fb11..e4891f0 100755
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -378,4 +378,13 @@ public abstract class AlignFile extends FileParse
     return newickStrings == null ? 0 : newickStrings.size();
   }
 
+  public void addGroups(AlignmentI al)
+  {
+
+    for (SequenceGroup sg : getSeqGroups())
+    {
+      al.addGroup(sg);
+    }
+  }
+
 }