X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAlignmentFileReaderI.java;fp=src%2Fjalview%2Fio%2FAlignmentFileReaderI.java;h=fe47c8ae5945b2af1567a8155647ee1a9fe5c4a9;hb=2e9e0527943d0c42a6059ebbb8e7e69346c38206;hp=a471d9b153b5cb702741d5d40978d6be7c22ee8a;hpb=e4843176d8337fc165c1b93ae6c161cb29521f6d;p=jalview.git

diff --git a/src/jalview/io/AlignmentFileReaderI.java b/src/jalview/io/AlignmentFileReaderI.java
index a471d9b..fe47c8a 100644
--- a/src/jalview/io/AlignmentFileReaderI.java
+++ b/src/jalview/io/AlignmentFileReaderI.java
@@ -20,12 +20,12 @@
  */
 package jalview.io;
 
-import jalview.api.AlignExportSettingI;
-import jalview.api.AlignmentViewPanel;
 import jalview.api.FeatureSettingsModelI;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
 
+import java.io.IOException;
+
 public interface AlignmentFileReaderI
 {
 
@@ -47,4 +47,13 @@ public interface AlignmentFileReaderI
 
   FeatureSettingsModelI getFeatureColourScheme();
 
+  /**
+   * Get a string array resulting from preprocessing the file
+   * 
+   * @return preprocess result
+   */
+  Object[] preprocess();
+
+  public abstract void parse() throws IOException;
+
 }