X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAnnotationFile.java;fp=src%2Fjalview%2Fio%2FAnnotationFile.java;h=61a30f82c7cf801a07f8129c4ccdc46c1204e2b5;hb=0eb7bbd7c1c29eae73f872693ae033003be1031c;hp=34fdabe0f9625ad6a54204bf32a54ab21bcb0f8d;hpb=494a321d41897be1492b973fdb37fa4ccb0ec94e;p=jalview.git

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index 34fdabe..61a30f8 100755
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -1637,9 +1637,8 @@ public class AnnotationFile
         else if (key.equalsIgnoreCase("consThreshold"))
         {
           sg.cs.setConservationInc(Integer.parseInt(value));
-          Conservation c = new Conservation("Group", 3,
-                  sg.getSequences(null), sg.getStartRes(),
-                  sg.getEndRes() + 1);
+          Conservation c = new Conservation("Group", sg.getSequences(null),
+                  sg.getStartRes(), sg.getEndRes() + 1);
 
           c.calculate();
           c.verdict(false, 25); // TODO: refer to conservation percent threshold