X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAnnotationFile.java;fp=src%2Fjalview%2Fio%2FAnnotationFile.java;h=bd536f3491e8cc7dd3ec59dbfd52f5c4110ab683;hb=82ef28a1cd9ff5314214b2b1d4aaa1269fb1ab7b;hp=b3a22df894f169bc408c3bef653c8eb86d691723;hpb=2ab244c2574a37aafb9b10cd8f2b27bf61dbe905;p=jalview.git

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index b3a22df..bd536f3 100755
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -338,12 +338,15 @@ public class AnnotationFile
           rowprops.append(row.centreColLabels);
           rowprops.append(newline);
         }
+        if (graphLine.length()>0) {
+          text.append(graphLine.toString());
+          graphLine.setLength(0);
+        }
       }
 
       text.append(newline);
 
       text.append(colours.toString());
-      text.append(graphLine.toString());
       if (graphGroup.size() > 0)
       {
         SequenceI oldRefSeq = refSeq;