X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FBioJsHTMLOutput.java;fp=src%2Fjalview%2Fio%2FBioJsHTMLOutput.java;h=ac29d8e8b340926eb847644d0eadc12631c7bf5d;hb=a207f4080b01543b48b80f6f3eb331b75b63bdc6;hp=1f4c53a554bbcbbea5469a059c459e75adeaf78e;hpb=3bff70075d04a89d91e6b317a4a3bdb007f32d5f;p=jalview.git

diff --git a/src/jalview/io/BioJsHTMLOutput.java b/src/jalview/io/BioJsHTMLOutput.java
index 1f4c53a..ac29d8e 100644
--- a/src/jalview/io/BioJsHTMLOutput.java
+++ b/src/jalview/io/BioJsHTMLOutput.java
@@ -115,16 +115,15 @@ public class BioJsHTMLOutput
       AlignmentExportData exportData = jalview.gui.AlignFrame
               .getAlignmentForExport(JSONFile.FILE_DESC,
                       ap.getAlignViewport(), exportSettings);
-      String bioJSON = new FormatAdapter(ap,
-              exportData.getSettings()).formatSequences(JSONFile.FILE_DESC,
-              exportData.getAlignment(), exportData.getOmitHidden(),
-              exportData.getStartEndPostions(), ap.getAlignViewport()
-                      .getColumnSelection());
+      String bioJSON = new FormatAdapter(ap, exportData.getSettings())
+              .formatSequences(JSONFile.FILE_DESC, exportData
+                      .getAlignment(), exportData.getOmitHidden(),
+                      exportData.getStartEndPostions(), ap
+                              .getAlignViewport().getColumnSelection());
 
       String bioJSTemplateString = getBioJsTemplateAsString();
       String generatedBioJsWithJalviewAlignmentAsJson = bioJSTemplateString
-              .replaceAll("#sequenceData#", bioJSON)
-              .toString();
+              .replaceAll("#sequenceData#", bioJSON).toString();
 
       PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(
               outputFile));