X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFastaFile.java;h=6e3ced88635f906442f3107133741b70732f9214;hb=174230b4233d9ce80f94527768d2cd2f76da11ab;hp=2e203af61198db26be0cdacd25deeedc76ee3090;hpb=8d3d3b4edf47e543b8b352c1b2c247cfc59122a4;p=jalview.git

diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java
index 2e203af..6e3ced8 100755
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -41,16 +41,6 @@ public class FastaFile extends AlignFile
     /**
      * Creates a new FastaFile object.
      *
-     * @param inStr DOCUMENT ME!
-     */
-    public FastaFile(String inStr)
-    {
-        super(inStr);
-    }
-
-    /**
-     * Creates a new FastaFile object.
-     *
      * @param inFile DOCUMENT ME!
      * @param type DOCUMENT ME!
      *
@@ -76,6 +66,7 @@ public class FastaFile extends AlignFile
 
         while ((line = nextLine()) != null)
         {
+            line = line.trim();
             if (line.length() > 0)
             {
                 if (line.charAt(0)=='>')